colour
<2%5%10%25%50%100%
πN − πS per codon
−0.10−0.03−0.0100.010.030.10
warm = excess nonsynonymous · cool = excess
synonymous · grey = neither. Ends saturate.
Read with care. At a single codon in a single sample you
usually see one difference or none, so πN − πS is mostly reporting WHICH
kind was observed, not which exceeds the other. On this run
have both terms non-zero — those are the only cells where the comparison is a
comparison. The pattern across many codons is the signal; one cell is not.
Bases
ACGT
Only the base that DIFFERS from the
reference is painted, in its own colour, within the third of the codon it occupies.
Below 3 px per codon the thirds cannot be separated, so the whole codon takes
the changed base's colour.
letters
outline
no call = background
▲ curated site ■ FluMut marker